Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs78657239 chr11:33058522 A/G 1.12E-6 290 22.83 21.07 1.7 KM Plot
CESC rs7868830 chr9:115577125 G/A 4.01E-9 299 8 19.43 23.3 KM Plot
CESC rs7872308 chr9:115577751 A/G 4.01E-9 299 8 19.43 23.3 KM Plot
CESC rs78807762 chr12:12484136 G/A 0 293 22.88 19.35 0.47 KM Plot
CESC rs78917591 chr17:76173948 C/T 7.49E-7 296 22.4 21.1 5.53 KM Plot
CESC rs7893986 chr10:88187322 T/C 1.8E-14 295 3.33 24.9 21.1 KM Plot
CESC rs7895498 chr10:99014318 G/T 1.7E-7 299 21.33 18.28 5.23 KM Plot
CESC rs7896838 chr10:88170322 T/C 3.41E-14 291 3.33 23.02 21.17 KM Plot
CESC rs7901479 chr10:88224397 T/C 1.6E-14 297 3.33 24.6 21.17 KM Plot
CESC rs7909635 chr10:88179141 A/G 1.35E-14 297 3.33 24.9 21.13 KM Plot
CESC rs7948320 chr11:23417157 C/T 8.09E-7 299 16.87 20.85 23.65 KM Plot
CESC rs79627602 chr5:126122142 G/A 0 294 21.23 20.77 1.73 KM Plot
CESC rs8027017 chr15:66809316 C/A 1.7E-6 295 21.4 20.77 10.17 KM Plot
CESC rs80355144 chr10:9817078 A/G 6.96E-5 298 23.3 18 13.78 KM Plot
CESC rs8054091 chr16:67931826 T/C 2.43E-6 295 20.43 28.77 17.15 KM Plot